BDMS documentation
###################

BDMS is a package for simulating trees from birth-death-mutation-sampling (BDMS) processes.
All code is freely available at `<https://github.com/dewitt-lab/BDMS>`_.

.. toctree::
  :maxdepth: 1
  :caption: User Guide

  install
  cite

.. toctree::
   :maxdepth: 2
   :caption: Tutorials

   notebooks/quickstart
   notebooks/performance

.. toctree::
   :maxdepth: 2
   :caption: API Documentation

   autoapi/bdms/index

.. toctree::
   :maxdepth: 2
   :caption: Developer Documentation

   developer
   todo

.. toctree::
   :maxdepth: 1
   :caption: Notes

   CHANGELOG
   faq


Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`