Model

Dynamical models.

class immunowave.model.Model[source]

Bases: Module, ABC

Abstract base class for dynamical models. Subclass this to implement your model.

immunowave.model.solve(model, state, t0, t1, dt0=None, rtol=1e-08, atol=1e-08, **kwargs)[source]

Solve the dynamical system.

Parameters:

  • model (Model) – Immune respone model.

  • state (State) – Initial condition, as equinox.Module of immunowave.spatial.ScalarField fields.

  • t0 (float) – The start of the region of integration.

  • t1 (float) – The end of the region of integration.

  • dt0 (float | None) – Initial step size. If None, the step size is chosen automatically.

  • rtol (float) – Relative tolerance.

  • atol (float) – Absolute tolerance.

  • **kwargs (Any) – Additional keyword arguments to pass to diffrax.diffeqsolve.

Returns:

Solution.

Return type:

Solution